The application process can be a little daunting the first time you send one in.
The staff in the backcountry office wants to accommodate as many applications as possible so they request alternates to enable them to do some juggling where needed. Keep in mind that if your application is received in the BC office on or before April 15th it will be assigned a random location in the "pile" of applications. Applications received after April 15 will be processed after that first pile is completed. As the staff goes down through the "pile" sites and dates get filled up. If you provide no alternative and a site you want is filled then your permit application will be denied. The more alternatives you provide the better your chances of getting the itinerary you want but it might be on different dates or with other modifications.
Are you using the 2011 BC Permit Application Form? If not you can download it from the page at this url:
http://www.nps.gov/glac/planyourvisit/backcountry.htm
There are 4 columns on that page:
Column 1 is for the Trip Leader and payment info.
Column 2 is for your first trip.
Column 3 is for your second trip.
Column 4 provides room for additional comments and check boxes to specify whether you will accept alternate itineraries.
So if you are planning to do only one backcountry trip put your desired dates and sites in the 2nd column "Trip 1 - First Choice" area.
You might use the "Trip 1 - Second Choice" area to list your second choice of dates or alternate sites for your trip. Your first and second choices can be the same trip with different dates or it can be two different itineraries for the one time you will be in the backcountry.
If your dates are flexible put that information at the bottom of the second column. The check boxes at the bottom of column 2 (and 3) assume only one start and end date for your trip and assumes these are either before or after your First and Second choices or your trip. If you are visiting the park more than once you could provide that info in the 4th column where there is space for additional comments.
If you use both the 2nd and 3rd columns for the same trip you might end up with two reservations for the same trip and pay two reservation fees. Not good.
If you plan on taking two backcountry trips make sure that none of the dates of the second trip overlap the first trip since it's hard to be in two places at once.
If you plan on taking more than two backcountry trips, use a second form and make sure that none of the dates of any trip overlap any other.
Hope this helps and good luck. If it doesn't help, post more questions. We'll eventually get the right answer.
Have a great backcountry adventure in Glacier this year!
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